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Appion Manual » History » Revision 14

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Amber Herold, 04/22/2010 12:41 PM

Appion Manual

  1. An Introduction to Appion
    1. What is Appion?
    2. System Requirements
    3. Authors
  2. Complete Installation
    1. Instructions for installing CentOS on your computer
    2. Download additional Software
    3. Database Server Installation
    4. Processing Server Installation
      1. Install supporting packages
      2. Download Appion Files
      3. Perform system check
      4. Install Appion Packages
      5. Configure leginon.cfg
      6. Explanation of Sample Names
      7. Configure sinedon.cfg
      8. Install External Packages
      9. Compile FindEM
      10. Compile Ace2
      11. Compile Radermacher
      12. Install Xmipp
      13. Test Appion
    5. Web Server Installation
    6. Create a Test Project
    7. Setup Remote Processing
  3. Upgrade Instructions
  4. Appion User Guide
    1. Appion and Leginon Database Tools
      1. Administration
      2. User Management
      3. Project DB
      4. Image Viewers
      5. LOI - Leginon Observer Interface
      6. RCT
      7. Tomography
      8. Hole Template Viewer
    2. Appion Processing
      1. Terminology
      2. Common Workflow
      3. Processing Cluster Login
      4. Particle Selection
      5. CTF Estimation
      6. Import Tools
      7. Image Assessment
      8. Region Mask Creation

Updated by Amber Herold over 14 years ago · 14 revisions