Install EM Hole Finder¶

The "EM Hole Finder" package is used for the Auto-masking feature of Appion. It automatically detects carbon edges in micrographs and creates masks for the images to hide the carbon portions. These masks can then be used to exclude particles in those regions from particle stacks.

The package is available at

https://github.com/hbradlow/em_hole_finder

To use it with Appion, the installed package directory (em_hole_finder) needs to be in the user's path.

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