Appion

h1. Myami code diagram

!http://emg.nysbc.org/attachments/63/AmiCodeDiagramSmall.jpg!

*	Sinedon

**	Generates queries.

**	Uses Python to generate mysql

*	Appion  

**	Core image processing code. 

**	Does not use numextension but does use radermacher

**	Contains Ace2 objective C which replaces Matlab

**	Mostly Python code.

*	Leginon

**	Microscope control

**	Installed Application

**	Includes a GUI

**	This is the Python part of Leginon

*	Imageviewer

**	Should be moved into the leginon directory

**	Contains Python code

*	Pyscope

**	Contains Python code

*	Comarray

**	C code

**	Pyscope needs this in certain cases

*	Myamiweb

**	Used to be called dbem

**	Contains Leginon and Appion web parts

**	Includes the PHP part of Leginon

**	The old “project” code has been migrated here and phased out.

*	Phpami

**	Contains PHP code

**	Denis made these 3 include files separate so they would not be public.

**	These files will eventually be moved to myamiweb and this folder will phase out.

*	Php_mrc

**	PHP extension to myamiweb to read mrc files

**	Contains C code

*	Numextension

**	C Code wrapped in Python

**	Implements canny edge detection

**	Used extensively

*	Radermacher

**	C Code

**	Could be merged with numextension or appion

*	Libcv

**	C Code

**	Computer vision library

*	Pyami

**	Common Python libraries used by appion and leginon

**	Image processing

**	Randoms