Appion

Appion Only (3.2)

Name:	Download site:	SuSE rpm name	Debian 8 package name
joblib 0.8.3-r1 or newer	https://pypi.python.org/pypi/joblib	python-joblib	python-joblib

joblib can be installed with the command

easy_install joblib==0.10.3

• The specific version is compatible with python 2.6 on CentOS 6
• If python 2.7 is used, the version does not need to be specified.

If that does not work because the version is not found. Try this on CentOS6

yum install python-pip
pip install joblib==0.10.3

Appion trunk only¶

• disable the archive rpmforge before reinstall if seeing error on import:
  

  ImportError: libhdf5.so.6: cannot open shared object file: No such file or directory
  

  
  See https://www.centos.org/forums/viewtopic.php?t=46181
  and
  http://kbfaq.blogspot.com/2011/08/installing-rpmforge-repository.html

1. Configure .appion.cfg
2. Install External Packages
3. MotionCor for DD camera frame movie drift correction
4. Install EMAN
5. Install EMAN2
6. Install SPIDER
7. Install Xmipp
8. Install UCSF Chimera
9. Install Grigorieff lab software
10. Compile FindEM
11. Install Ace2
12. Install Imod
13. Install Protomo
14. Install EM Hole Finder
15. Install SIMPLE
16. Test Appion