Start with existing CentOS 5.3 64-bit installation¶

• Table of contents
• Start with existing CentOS 5.3 64-bit installation
  • 1 Download additional software
  • 2 Database Server Installation
  • 3 Processing Server Installation
  • 4 Web Server Installation
    • Initialize database tables from the web tools
    • Potential problems
      • Firewall settings
      • Security-enhanced linux
  • 5 Install external packages
    • Compile Xmipp for OpenMPI
  • 6 Install a PBS job submission system
  • 7 Do testing (Start at 4 of any flavor)

1 Download additional software¶

Download additional Software

---

2 Database Server Installation¶

Setup MySQL database

---

3 Processing Server Installation¶

Setup Appion programs

---

4 Web Server Installation¶

Refer to Web Server Installation

TODO: The next steps have already been completed, grab any extra info from here and move to other location.

Initialize database tables from the web tools¶

Please consult Create a test project and processing database

Potential problems¶

Firewall settings¶

You may need to configure your firewall to allow incoming HTTP (port 80) and MySQL (port 3306) traffic:

$ system-config-securitylevel

Security-enhanced linux¶

Security-enhanced linux may be preventing your files from loading. To fix this run the following command:

$ sudo /usr/bin/chcon -R -t httpd_sys_content_t /var/www/html/

see this website for more details on SELinux

---

5 Install external packages¶

Please follow individual package installation instruction provided with them

Compile Xmipp for OpenMPI¶

Install Xmipp

---

6 Install a PBS job submission system¶

Install PBS

---

7 Do testing (Start at 4 of any flavor)¶

Get started with a project
This has some repeated information.
Basically need to do the following:

1. Add a group
2. Add a user
3. Add instruments
4. Create a project
5. Create the project database
6. Upload images to a new session
7. View the images
   ----