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Start with existing CentOS installation » History » Revision 73

Revision 72 (Amber Herold, 04/06/2010 02:49 PM) → Revision 73/80 (Amber Herold, 04/06/2010 03:03 PM)

h1. Start with existing CentOS 5.3 64-bit installation 

 {{>toc}} 

 h2. 1 Download additional software  

 [[Download additional Software]] 

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 h2. 2 Database Server Installation 
 

 [[Setup MySQL database]] 

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 h2. 3 Processing Server Installation  


 [[Setup Appion programs]] 

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 h2. 4 Web Server Installation 


 Refer to [[Web Server Installation]] 


 *TODO:* The next steps have already been completed, grab any extra info from here and move to other location. 



 h3. Initialize database tables from the web tools  

 Please consult [[Start_with_existing_ANY_Linux_flavor_OS#4-Create-a-test-project-and-processing-database|Create a test project and processing database]] 

 h3. Potential problems  

 h4. Firewall settings  

 You may need to configure your firewall to allow incoming HTTP (port 80) and MySQL (port 3306) traffic: 

 <pre> 
 $ system-config-securitylevel 
 </pre> 

 h4. Security-enhanced linux  

 "Security-enhanced linux (SELinux)":http://en.wikipedia.org/wiki/Security-Enhanced_Linux    may be preventing your files from loading. To fix this run the following command: 

 <pre> 
 $ sudo /usr/bin/chcon -R -t httpd_sys_content_t /var/www/html/ 
 </pre> 

 see "this website":http://docs.fedoraproject.org/selinux-apache-fc3/sn-simple-setup.html    for more details on SELinux 

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 h2. 5 Install external packages  

 *Please follow individual package installation instruction provided with them* 

 h3. Compile Xmipp for OpenMPI  

 [[Install Xmipp]] 

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 h2. 6 Install a PBS job submission system 

 [[Install PBS]] 

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 h2. 7 Do testing (Start at 4 of any flavor) 

 [[Start_with_existing_ANY_Linux_flavor_OS#4-Create-a-test-project-and-processing-database|Get started with a project]] 
 This has some repeated information. 
 Basically need to do the following: 

 # Add a group 
 # Add a user 
 # Add instruments 
 # Create a project 
 # Create the project database 
 # Upload images to a new session 
 # View the images 
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