Instrumentscfg for 22 » History » Version 10
Anchi Cheng, 10/31/2013 09:23 PM
| 1 | 1 | Anchi Cheng | *cs is the coefficient of spherical aberration in meters*. Find out from TEM manufacture the proper value for your tem. |
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| 2 | |||
| 3 | 10 | Anchi Cheng | * height and width is based on the orientation presented in Leginon image viewer. |
| 4 | * Some Tietz camera may have an odd physical dimension. Use TCL/EMMenu program to find out the good dimension used in Tietz's own software and entered in this configuration. |
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| 5 | |||
| 6 | 6 | Anchi Cheng | *zplane is a number that gives the order of camera*. If a camera with low zplane value is going to acquire an image, Leginon will attempt to retract all cameras at higher zplane values. |
| 7 | 1 | Anchi Cheng | |
| 8 | 7 | Anchi Cheng | !zplane.png! |
| 9 | |||
| 10 | 1 | Anchi Cheng | * One computer for both tem and digital camera: |
| 11 | <pre> |
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| 12 | [tem] |
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| 13 | class: tecnai.Tecnai |
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| 14 | cs: 2.0e-3 |
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| 15 | [camera] |
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| 16 | class: gatan.Gatan |
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| 17 | zplane: 50 |
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| 18 | 9 | Anchi Cheng | height: 4096 |
| 19 | width: 4096 |
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| 20 | 1 | Anchi Cheng | </pre> |
| 21 | |||
| 22 | 5 | Anchi Cheng | * Separate computers for the two instruments: configure only the instrument reside on the particular computer |
| 23 | 1 | Anchi Cheng | ** On the computer that controls the tem: |
| 24 | <pre> |
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| 25 | [tem] |
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| 26 | class: tecnai.Tecnai |
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| 27 | cs: 2.0e-3 |
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| 28 | </pre> |
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| 29 | ** On the computer that controls the digital camera: |
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| 30 | <pre> |
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| 31 | [camera] |
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| 32 | class: gatan.Gatan |
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| 33 | zplane: 50 |
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| 34 | 9 | Anchi Cheng | height: 4096 |
| 35 | width: 4096 |
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| 36 | 2 | Anchi Cheng | </pre> |
| 37 | |||
| 38 | 8 | Anchi Cheng | * Two cameras that retract/insert at the same time, typically one of them is an off-axis camera, such as in the case of DE12 and DE Survey camera pair. |
| 39 | 2 | Anchi Cheng | ** On the computer that controls the digital camera: |
| 40 | <pre> |
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| 41 | [camera1] |
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| 42 | 4 | Jim Pulokas | class: de.DE12 |
| 43 | 2 | Anchi Cheng | zplane: 50 |
| 44 | 9 | Anchi Cheng | height: 3072 |
| 45 | width: 4096 |
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| 46 | 3 | Anchi Cheng | [camera2] |
| 47 | 4 | Jim Pulokas | class: de.DESurvey |
| 48 | 2 | Anchi Cheng | zplane: 50 |
| 49 | 9 | Anchi Cheng | height: 2048 |
| 50 | width: 2048 |
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| 51 | 2 | Anchi Cheng | </pre> |
| 52 | |||
| 53 | 8 | Anchi Cheng | * Two cameras on the same computer but one is retractable and one is non-retractable and at lower position. |
| 54 | 2 | Anchi Cheng | ** On the computer that controls the digital camera: |
| 55 | <pre> |
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| 56 | [camera1] |
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| 57 | 4 | Jim Pulokas | class: de.DE12 |
| 58 | 2 | Anchi Cheng | zplane: 50 |
| 59 | 9 | Anchi Cheng | height: 3072 |
| 60 | width: 4096 |
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| 61 | |||
| 62 | 2 | Anchi Cheng | [camera2] |
| 63 | 1 | Anchi Cheng | class: tietz.TietzPXL |
| 64 | zplane: 5 |
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| 65 | 9 | Anchi Cheng | height: 4096 |
| 66 | width: 4096 |
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| 67 | 5 | Anchi Cheng | </pre> |
| 68 | |||
| 69 | * Gatan Orius camera that is installed typically with Gatan K2/Falcon camera is technically on the same plane but is not capable of insertion unless K2 is retracted. On the other hand, K2 camera insertion includes a retraction of Orius at lower level of the function call in DM. Therefore, Orius is considered as a camera at lower zplane. |
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| 70 | <pre> |
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| 71 | [camera1] |
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| 72 | class: dmsem.GatanK2Base |
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| 73 | zplane: 50 |
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| 74 | 9 | Anchi Cheng | height: 3838 |
| 75 | width: 3710 |
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| 76 | |||
| 77 | 5 | Anchi Cheng | [camera2] |
| 78 | class: dmsem.GatanOrius |
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| 79 | zplane: 49 |
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| 80 | 9 | Anchi Cheng | height: 2048 |
| 81 | width: 2048 |
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| 82 | 1 | Anchi Cheng | </pre> |