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Feature #3950

open

Create CTF test dataset within Docker

Added by Neil Voss over 8 years ago. Updated about 7 years ago.

Status:
Assigned
Priority:
High
Assignee:
Neil Voss
Category:
-
Target version:
-
Start date:
02/15/2016
Due date:
% Done:

0%

Estimated time:

Files

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17jul27d_b_00018gr_00005sq_v01_00008hl16_00007edhiii-a.mrc (54.3 MB) 17jul27d_b_00018gr_00005sq_v01_00008hl16_00007edhiii-a.mrc Gabriel Lander, 08/14/2017 10:08 AM
17jul21b_00010gr_00002sq_00035hl_00002ex.mrc (256 MB) 17jul21b_00010gr_00002sq_00035hl_00002ex.mrc Scott Stagg, 08/14/2017 11:47 AM
17jul27d_00019hl16_00003edhiii-a.mrc (54.3 MB) 17jul27d_00019hl16_00003edhiii-a.mrc Gabriel Lander, 08/15/2017 12:27 PM
17jul27d_00019hl16_00013edhiii-a.mrc (54.3 MB) 17jul27d_00019hl16_00013edhiii-a.mrc Gabriel Lander, 08/15/2017 12:27 PM
17jul27d_b_00018gr_00004sq_v01_00002hl16_00011edhiii-a.mrc (54.3 MB) 17jul27d_b_00018gr_00004sq_v01_00002hl16_00011edhiii-a.mrc Gabriel Lander, 08/15/2017 12:27 PM
17jul27d_b_00018gr_00004sq_v02_00004hl16_00005edhiii-a.mrc (54.3 MB) 17jul27d_b_00018gr_00004sq_v02_00004hl16_00005edhiii-a.mrc Gabriel Lander, 08/15/2017 12:28 PM
17jul27d_b_00018gr_00004sq_v02_00004hl16_00009edhiii-a.mrc (54.3 MB) 17jul27d_b_00018gr_00004sq_v02_00004hl16_00009edhiii-a.mrc Gabriel Lander, 08/15/2017 12:28 PM
17jul27d_b_00018gr_00004sq_v02_00008hl16_00002edhiii-a.mrc (54.3 MB) 17jul27d_b_00018gr_00004sq_v02_00008hl16_00002edhiii-a.mrc Gabriel Lander, 08/15/2017 12:29 PM

Related issues 7 (4 open — 3 closed)

Related to Appion - Feature #3549: Create Docker container for running appionAssignedNeil Voss09/11/2015

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Related to Appion - Bug #3494: difficult image for new ctfdisplay.py to do noise subtractionIn TestNeil Voss08/31/2015

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Related to Appion - Bug #3559: Thon ring contrast is lower on new ctfdisplay 2D plotIn TestCarl Negro09/15/2015

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Related to Appion - Bug #3547: ctffind4 hard to control defocus rangeIn Code ReviewAnchi Cheng09/10/2015

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Related to Appion - Bug #3438: noise subtraction in ctfdisplay normalization errorClosedGabriel Lander08/26/2015

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Related to Appion - Bug #3356: Ctf Display does not work as well when extending resolution past 5 ÅClosed08/12/2015

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Related to Appion - Bug #3942: Create a CTF test datasetClosedNeil Voss02/10/2016

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 #1

Updated by Neil Voss over 8 years ago

  • Related to Feature #3549: Create Docker container for running appion added
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 #2

Updated by Neil Voss over 8 years ago

  • Related to Bug #3494: difficult image for new ctfdisplay.py to do noise subtraction added
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 #3

Updated by Neil Voss over 8 years ago

  • Related to Bug #3559: Thon ring contrast is lower on new ctfdisplay 2D plot added
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 #4

Updated by Neil Voss over 8 years ago

  • Related to Bug #3547: ctffind4 hard to control defocus range added
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 #5

Updated by Neil Voss over 8 years ago

  • Related to Bug #3438: noise subtraction in ctfdisplay normalization error added
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 #6

Updated by Neil Voss over 8 years ago

  • Related to Bug #3356: Ctf Display does not work as well when extending resolution past 5 Å added
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 #7

Updated by Neil Voss over 8 years ago

  • Related to Bug #3942: Create a CTF test dataset added
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 #8

Updated by Gabriel Lander about 7 years ago

CTFfind4 estimates to 3.7 angstroms, but analyses fail.
KEV = 200
CS = 2.7
apix = 0.56

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 #10

Updated by Scott Stagg about 7 years ago

Cs 2.7
Apix 1.01
300 kV

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