Bug #2922
closedDoG picker is broken!
0%
Description
Tried to run dog picker, here is the command I used and the error:
/opt/myamisnap/bin/appion dogPicker.py --runname=dogrun1 --rundir=/ami/data15/appion/14sep04e/extract/dogrun1 --projectid=450 --session=14sep04e --no-rejects --no-commit --no-continue --mrclist=14sep04e_00006sq_v01_00010hl_v02_00025en.mrc --maxsize=1.2 --peaktype=centerofmass --maxthresh=1.5 --thresh=.4 --median=2 --lowpass=25 --highpass=0 --planereg --bin=8 --diam=100 --pixlimit=4.0
Traceback (most recent call last):
File "/opt/myamisnap/bin/dogPicker.py", line 9, in <module>
from appionlib import particleLoop2
File "/opt/myamisnap/lib/appionlib/particleLoop2.py", line 12, in <module>
from appionlib import apPeaks
File "/opt/myamisnap/lib/appionlib/apPeaks.py", line 6, in <module>
from joblib import Parallel, delayed
ImportError: No module named joblib
Updated by Sargis Dallakyan about 10 years ago
- Status changed from New to In Test
Installed the missing joblib module on guppy head and work nodes. It was caused by this revision http://emg.nysbc.org/projects/appion/repository/revisions/18553
Will need to update Appion install docs once I can confirm that installing joblib==0.8.3 fixed this.
Updated by Melody Campbell about 10 years ago
- Status changed from In Test to Closed
thanks Sargis, it is fixed!
Updated by Gabriel Lander about 10 years ago
- Related to Bug #2923: tiltaligner bug added