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Bug #2923

closed

tiltaligner bug

Added by Scott Stagg about 10 years ago. Updated about 10 years ago.

Status:
Closed
Priority:
Normal
Assignee:
Sargis Dallakyan
Category:
-
Target version:
-
Start date:
09/08/2014
Due date:
% Done:

0%

Estimated time:
Affected Version:
Appion/Leginon 3.1.0
Show in known bugs:
No
Workaround:

Description

I'm getting the error below. Did someone forget to add joblib to SVN?

Traceback (most recent call last):
  File "/panfs/storage.local/imb/stagg/software/myami_dev/appion/bin/tiltaligner.py", line 9, in <module>
    from appionlib import particleLoop2
  File "/panfs/storage.local/imb/stagg/software/myami_dev/appion/appionlib/particleLoop2.py", line 12, in <module>
    from appionlib import apPeaks
  File "/panfs/storage.local/imb/stagg/software/myami_dev/appion/appionlib/apPeaks.py", line 6, in <module>
    from joblib import Parallel, delayed
ImportError: No module named joblib


Related issues 2 (0 open2 closed)

Related to Appion - Bug #2922: DoG picker is broken!ClosedSargis Dallakyan09/05/2014

Actions
Related to Leginon - Bug #2575: Template picking job hangs in Garibaldi due to FindEM hangingClosedDmitry Lyumkis11/07/2013

Actions
Actions #1

Updated by Anchi Cheng about 10 years ago

  • Status changed from New to Assigned
  • Assignee set to Gabriel Lander
Actions #2

Updated by Gabriel Lander about 10 years ago

  • Related to Bug #2922: DoG picker is broken! added
Actions #3

Updated by Gabriel Lander about 10 years ago

  • Related to Bug #2575: Template picking job hangs in Garibaldi due to FindEM hanging added
Actions #4

Updated by Gabriel Lander about 10 years ago

  • Assignee changed from Gabriel Lander to Sargis Dallakyan

This is my fault - I added joblib to parallelize particle picking, I assumed joblib was a standard python library. Guess it's not. How do we deal with adding libraries with Appion?

Actions #5

Updated by Scott Stagg about 10 years ago

I did 'pip install joblib' and now it's working just fine.

Actions #6

Updated by Sargis Dallakyan about 10 years ago

  • Status changed from Assigned to Closed
Actions

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