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Bug #2923
closedtiltaligner bug
Status:
Closed
Priority:
Normal
Assignee:
Sargis Dallakyan
Category:
-
Target version:
-
Start date:
09/08/2014
Due date:
% Done:
0%
Estimated time:
Affected Version:
Appion/Leginon 3.1.0
Show in known bugs:
No
Workaround:
Description
I'm getting the error below. Did someone forget to add joblib to SVN?
Traceback (most recent call last):
File "/panfs/storage.local/imb/stagg/software/myami_dev/appion/bin/tiltaligner.py", line 9, in <module>
from appionlib import particleLoop2
File "/panfs/storage.local/imb/stagg/software/myami_dev/appion/appionlib/particleLoop2.py", line 12, in <module>
from appionlib import apPeaks
File "/panfs/storage.local/imb/stagg/software/myami_dev/appion/appionlib/apPeaks.py", line 6, in <module>
from joblib import Parallel, delayed
ImportError: No module named joblib
Updated by Anchi Cheng over 10 years ago
- Status changed from New to Assigned
- Assignee set to Gabriel Lander
Updated by Gabriel Lander over 10 years ago
- Related to Bug #2922: DoG picker is broken! added
Updated by Gabriel Lander over 10 years ago
- Related to Bug #2575: Template picking job hangs in Garibaldi due to FindEM hanging added
Updated by Gabriel Lander over 10 years ago
- Assignee changed from Gabriel Lander to Sargis Dallakyan
This is my fault - I added joblib to parallelize particle picking, I assumed joblib was a standard python library. Guess it's not. How do we deal with adding libraries with Appion?
Updated by Scott Stagg over 10 years ago
I did 'pip install joblib' and now it's working just fine.
Updated by Sargis Dallakyan over 10 years ago
- Status changed from Assigned to Closed
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