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Leginon

Leginon is a system designed for automated collection of images from a transmission electron microscope. Instruments supported: FEI Tecnai series TEM, Tietz and Gatan CCD cameras.

Subject Author Created Replies Last message
At what point is information written to the myami database? Patrick Goetz 01/15/2019 05:15 PM 5 Added by Patrick Goetz almost 6 years ago
RE: At what point is information written to the myami dat...
K3 Camera? Patrick Goetz 04/19/2018 04:48 PM 5 Added by Anchi Cheng almost 6 years ago
RE: K3 Camera?
Is Leginon on Windows using 7-zip? Patrick Goetz 11/16/2018 11:31 AM 3 Added by Christopher Lilienthal almost 6 years ago
RE: Is Leginon on Windows using 7-zip?
How does rawtransfer determination group ownership for images? Patrick Goetz 12/10/2018 05:38 PM 1 Added by Sargis Dallakyan almost 6 years ago
RE: How does rawtransfer determination group ownership fo...
Gatan Rio camera Arne Moeller 11/20/2018 09:13 AM 3 Added by Anchi Cheng about 6 years ago
RE: Gatan Rio camera
Atlas Creation Error: setDirectStagePosition not in description Colin Deniston 11/19/2018 05:19 PM 1 Added by Anchi Cheng about 6 years ago
RE: Atlas Creation Error: setDirectStagePosition not in d...
Using the extension .mrcs instead of .mrc Patrick Goetz 11/12/2018 12:58 PM 2 Added by Patrick Goetz about 6 years ago
RE: Using the extension .mrcs instead of .mrc
Automating mrc --> tiff? Patrick Goetz 08/20/2018 06:23 PM 4 Added by Sargis Dallakyan about 6 years ago
RE: Automating mrc --> tiff?
Users tried processing with 2 different leginon paths, now rawtransfer is stuck Patrick Goetz 08/30/2018 11:10 AM 2 Added by Patrick Goetz about 6 years ago
RE: Users tried processing with 2 different leginon paths...
Conflict between local leginon.cfg and rawtransfer.py command line options? Patrick Goetz 08/10/2018 01:21 PM 8 Added by Anchi Cheng about 6 years ago
RE: Conflict between local leginon.cfg and rawtransfer.py...
Issue with preset alignment Rick Baker 07/27/2018 06:10 PM 2 Added by Rick Baker over 6 years ago
RE: Issue with preset alignment
Ice thickness information into hole finder Bob Grassucci 07/24/2018 02:36 PM 0
How does leginon find the gain reference - through naming file system or through database? Michael Cianfrocco 07/11/2018 10:42 AM 6 Added by Anchi Cheng over 6 years ago
RE: How does leginon find the gain reference - through na...
SOLVED: I've broken redux, now what? Patrick Goetz 07/19/2018 04:31 PM 3 Added by Anchi Cheng over 6 years ago
RE: I've broken redux, now what?
SOLVED: How does rawtransfer.py decide where images need to go? Patrick Goetz 07/19/2018 10:59 AM 2 Added by Patrick Goetz over 6 years ago
RE: How does rawtransfer.py decide where images need to go?
SOLVED: Question about monitoring rawtransfer.py Patrick Goetz 07/16/2018 03:46 PM 2 Added by Patrick Goetz over 6 years ago
RE: Question about monitoring rawtransfer.py
"Process target failed: List index out of range" error during tomography Aguang Dai 06/19/2018 06:36 PM 2 Added by Aguang Dai over 6 years ago
RE: "Process target failed: List index out of range" erro...
Stage issues with Leginon and Talos Adam Wier 06/18/2018 01:54 PM 3 Added by Anchi Cheng over 6 years ago
RE: Stage issues with Leginon and Talos
Help! RawTransfer is stuck -- how to debug? Patrick Goetz 06/08/2018 07:09 PM 3 Added by Anchi Cheng over 6 years ago
RE: Help! RawTransfer is stuck -- how to debug?
Webpage no displaying for goniometer calibration and tomo shift graph Aguang Dai 06/04/2018 11:55 AM 1 Added by Anchi Cheng over 6 years ago
RE: Webpage no displaying for goniometer calibration and ...
Atlas Error Colin Deniston 05/03/2018 09:52 PM 1 Added by Anchi Cheng over 6 years ago
RE: Atlas Error
How to handle security when multiple groups are using the same leginon system? Patrick Goetz 04/06/2018 01:10 PM 6 Added by Anchi Cheng over 6 years ago
RE: How to handle security when multiple groups are using...
Atlas error - setDirectStagePosition Rick Baker 04/24/2018 02:18 PM 3 Added by Rick Baker over 6 years ago
RE: Atlas error - setDirectStagePosition
v3.3 camera data mismatch Jian Shi 03/21/2018 05:50 AM 3 Added by Anchi Cheng over 6 years ago
RE: v3.3 camera data mismatch
SOLVED: Stuck during loading MSI-Tomograph2 application Aguang Dai 03/19/2018 05:47 PM 15 Added by Anchi Cheng over 6 years ago
RE: Stuck during loading MSI-Tomograph2 application
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