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Leginon

Leginon is a system designed for automated collection of images from a transmission electron microscope. Instruments supported: FEI Tecnai series TEM, Tietz and Gatan CCD cameras.

Subject Author Created Replies Last message
Phase plate integration? Michael Cianfrocco 10/13/2015 04:57 PM 3 Added by Jian Shi over 8 years ago
RE: Phase plate integration?
Data Access Error Bob Grassucci 03/10/2016 08:35 AM 1 Added by Sargis Dallakyan over 8 years ago
RE: Data Access Error
rawtransfer.py issues Tom Houweling 06/18/2013 11:26 AM 5 Added by Anchi Cheng over 8 years ago
RE: rawtransfer.py issues
Computer vision module import error. Can not run RCT Arne Moeller 02/18/2016 05:13 AM 1 Added by Anchi Cheng almost 9 years ago
RE: Computer vision module import error. Can not run RCT
images are not saved to images path which is set at leginon.cfg ShinBo Chen 02/15/2016 03:28 AM 3 Added by Anchi Cheng almost 9 years ago
RE: images are not saved to images path which is set at l...
Sq and Hl misalignment over time Bob Grassucci 02/05/2016 11:10 AM 7 Added by Anchi Cheng almost 9 years ago
RE: Sq and Hl misalignment over time
Pause leginon during liquid nitrogen filling of Talos-Artica Michael Cianfrocco 01/30/2016 09:19 PM 2 Added by Michael Cianfrocco almost 9 years ago
RE: Pause leginon during liquid nitrogen filling of Talos...
dmsem.py fails to open local connection on K2 computer Gregory Alushin 02/24/2015 09:12 AM 2 Added by Anchi Cheng almost 9 years ago
RE: dmsem.py fails to open local connection on K2 computer
Leginon-3.2 not saving bright/dark/gain references Michael Cianfrocco 01/21/2016 03:41 PM 2 Added by Michael Cianfrocco almost 9 years ago
RE: Leginon-3.2 not saving bright/dark/gain references
Asynchronous processing: Problems in event linking Joel Lüthi 01/20/2016 12:41 PM 3 Added by Anchi Cheng almost 9 years ago
RE: Asynchronous processing: Problems in event linking
Ceta support Michael Cianfrocco 01/08/2016 01:29 AM 3 Added by Anchi Cheng almost 9 years ago
RE: Ceta support
rctacquisition.py error - Possible subprocess: Permission denied Michael Cianfrocco 01/14/2016 05:11 PM 3 Added by Anchi Cheng almost 9 years ago
RE: rctacquisition.py error - Possible subprocess: Permis...
Leginon 3.2 upgrade no interfaces can be initialized Bob Grassucci 01/14/2016 03:21 PM 4 Added by Bob Grassucci almost 9 years ago
RE: Leginon 3.2 upgrade no interfaces can be initialized
setup for saving as tiff Jean-Paul Armache 08/05/2015 04:09 PM 3 Added by Anchi Cheng almost 9 years ago
RE: setup for saving as tiff
Load stitched image and targets into Leginon & submit them to next acquisition class Joel Lüthi 01/06/2016 08:30 AM 5 Added by Anchi Cheng almost 9 years ago
RE: Load stitched image and targets into Leginon & submit...
image shift target rotated by 90 degree between target selected in LM mode and exposure in SA mode Anchi Cheng 05/07/2014 01:37 PM 6 Added by Anchi Cheng almost 9 years ago
RE: image shift target rotated by 90 degree between targe...
Unable to remove bad rows, bad columns Michael Cianfrocco 12/22/2015 03:46 PM 2 Added by Anchi Cheng almost 9 years ago
RE: Unable to remove bad rows, bad columns
Leginon stopped with DataAccessError Bob Grassucci 12/23/2015 08:38 AM 2 Added by Anchi Cheng almost 9 years ago
RE: Leginon stopped with DataAccessError
Stage does not rotate back to zero after doing z-height measurements @Maria Janssen 12/01/2015 06:47 PM 5 Added by Anchi Cheng almost 9 years ago
RE: Stage does not rotate back to zero after doing z-heig...
Automatically target center of squares in square targeting Joel Lüthi 11/06/2015 02:50 AM 1 Added by Anchi Cheng about 9 years ago
RE: Automatically target center of squares in square targ...
Extracting stage positions from mrc files Joel Lüthi 10/26/2015 06:25 AM 2 Added by Joel Lüthi about 9 years ago
RE: Extracting stage positions from mrc files
Multiple presets in Exposure MultiMove Thomas Klose 10/26/2015 05:06 PM 1 Added by Anchi Cheng about 9 years ago
RE: Multiple presets in Exposure MultiMove
Image shift calibration trouble Jason van Rooyen 09/05/2014 08:04 AM 13 Added by Anchi Cheng about 9 years ago
RE: Image shift calibration trouble
Trouble in MSI-Raster, sub-square targeting, Leginon3.1 Ariane Fecteau 09/16/2015 10:08 AM 1 Added by Anchi Cheng about 9 years ago
RE: Trouble in MSI-Raster, sub-square targeting, Leginon3.1
Adding post-GIF camera on a scope with Leginon installed for pre-GIF usage Anchi Cheng 09/06/2015 12:36 AM 1 Added by Anchi Cheng about 9 years ago
RE: Adding post-GIF camera on a scope with Leginon instal...
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