Index by date
04/12/2024
04/27/2023
03/31/2023
01/05/2023
01/04/2023
01/03/2023
11/17/2022
11/10/2022
11/01/2022
10/26/2022
10/11/2022
10/06/2022
09/27/2022
09/21/2022
- How to Update from v35 (Instrument Windows Computer)
- Leginon Manual
- Upgrade to Leginon System version 35 from version 34
- Upgrade to Leginon System version 36 from version 35
09/02/2022
08/17/2022
08/10/2022
08/09/2022
07/27/2022
07/18/2022
05/19/2022
05/18/2022
05/05/2022
04/12/2022
03/31/2022
03/29/2022
03/15/2022
02/02/2022
01/21/2022
01/11/2022
- FEI Talos installation specifics
- Windows 32 External Package Installers Common
- Windows External Package installers
- Windows General Package Requirement
- Windows Installation All
- Windows Microscope Package Requirement
12/14/2021
12/01/2021
11/18/2021
10/12/2021
- Auoit program script compilation
- AutoIt program and script compilation
- Volta Phase Plate Control Installation Reguirements
- Volta Phase Plate Usage
09/13/2021
07/30/2021
07/29/2021
- Create Leginon view port
- Hitachi install
- Installation on the camera computer
- Installation on the microscope computer 30
- Tivips f416 electron diffraction recording
06/22/2021
05/17/2021
05/03/2021
03/31/2021
03/30/2021
01/16/2021
11/19/2020
11/16/2020
- How to Update from v34 (Instrument Windows Computer)
- How to Update from v34 (Linux)
- New User Features 35
- New User Features beta
- PyScope Changes 35
- Upgrade Instructions
11/14/2020
11/13/2020
11/04/2020
11/03/2020
10/29/2020
- Exposure Targeting Set-up for MSI-T
- Exposure Targeting Set-up for MSI-T for Four holes
- Falcon 4 support
10/28/2020
10/27/2020
10/15/2020
10/09/2020
10/07/2020
09/30/2020
09/03/2020
08/04/2020
04/29/2020
04/24/2020
03/10/2020
03/06/2020
02/24/2020
01/30/2020
01/17/2020
01/10/2020
- Eagle camera installation and setup
- Extra supporting package table
- Slack notification for Leginon errors
01/08/2020
12/06/2019
11/15/2019
- Configure pyamicfg for host-ip pairings
- SerialEM SEMCCD-GMS plugins
- Test Network Connection Between Remote and Instrument Computers
- Windows Camera Package Requirement
11/06/2019
09/10/2019
08/26/2019
08/01/2019
07/31/2019
06/23/2019
06/21/2019
06/05/2019
05/08/2019
04/22/2019
04/15/2019
03/31/2019
03/29/2019
03/23/2019
03/22/2019
03/21/2019
- 19 Å mouse mFth1 recombinant apoferritin image-shift data collection with image-shift aberration-correction
- Data Collection Setup Examples
- Falcon III integration
- Gatan K3 Instrumentscfg
- Krios1-K2-NYSBC-large shift
- PyScope Changes 34
- Sub-3Å proteasome image-shift data collection
03/20/2019
03/18/2019
- Lacey Carbon Application
- RasterFC Finder node set-up
- RasterFC Lacey carbon rastering
- Using MSI-T application to collect Lacey Carbon support data
03/12/2019
03/11/2019
03/10/2019
01/21/2019
12/07/2018
10/03/2018
08/15/2018
08/14/2018
07/18/2018
07/11/2018
07/10/2018
07/05/2018
07/03/2018
04/06/2018
04/04/2018
03/27/2018
03/19/2018
02/12/2018
02/08/2018
02/05/2018
02/02/2018
- Import Export Application Settings as json file
- Leginon System version 33
- MSI-PP Appplication
- New User Features 33
- Phase Plate Aligner Node Class
- Phase Plate Aligner Tool Bar
- Upgrade to Leginon System version 33 from version 32
02/01/2018
- How to Update from v32 (Instrument Windows Computer)
- PyScope Changes 33
- Setup feicfg
- Tecnai to fei Instrumentscfg change
01/31/2018
01/30/2018
- Additional work at the computer controlling the microscope and camera (Window)
- Test run operation problems
01/29/2018
- Check Cs value match before using Leginon after update
- Compatible Instrument
- Installation on the instrument computers
- Instrumentscfg for 22
- Testing pyscope instrument
- Windows Myami Configuration
01/17/2018
01/08/2018
12/18/2017
12/13/2017
12/08/2017
- Create and Edit Applications
- Create Leginon "Simple Application"
- Edit an existing application as an xml file
12/06/2017
11/29/2017
11/18/2017
11/11/2017
11/10/2017
11/01/2017
- Falcon Orius combo installation and setup
- Gatan on Windows-32 with TecnaiCCDdll
- Windows Setup After Software Installation
10/19/2017
10/18/2017
- Checking Matrix and Modeled Stage Position Calibration
- Leginon "MSI-T-Tilt" Application
- Scaling Stage Position Matrix
- Scaling Stage Position Matrix Calibration
- Summary of this application - MSI-T-Tilt
10/11/2017
09/14/2017
- Minimum Requirements for non-frame-saving camera
- Possible Computer Set-up Configurations
- SEMC file storage policy
06/02/2017
05/25/2017
05/17/2017
05/05/2017
05/02/2017
05/01/2017
04/20/2017
04/19/2017
03/30/2017
03/28/2017
03/21/2017
- Aborting targets that are not yet being processed
- Calibrations
- Edit an existing project
- Goniometer
- More about Groups shared
03/13/2017
02/24/2017
12/09/2016
10/28/2016
10/25/2016
09/28/2016
09/06/2016
08/29/2016
08/16/2016
- Image Shift matrix calibration
- Krios-K2-TSRI Presets
- Krios1-K2-NYSBC
- Sub-3Å proteasome stage-shift data collection
- Troubles with Targeting
07/20/2016
07/07/2016
06/09/2016
05/04/2016
- Additional Database Server Setup after Web Server Installation
- Installation on the microscope computer
- Testing auto-installation
05/03/2016
05/02/2016
03/12/2016
- An Introduction to Leginon
- Gatan K2 Summit Support
- JEOLCOM installation specifics
- JEOL 1230 installation specifics
- Supported Instrument
03/03/2016
02/08/2016
02/02/2016
- DE-12 Installation Pyscope Test
- Dm camera configuration
- Gatan UltraScan dmsem Installation Pyscope Test
01/22/2016
01/21/2016
12/16/2015
12/15/2015
11/10/2015
- Running get beamtiltscalepy
- TEM Scripting Beam Tilt Calibration
- Upgrade to Leginon System version 32 from version 31
11/08/2015
- Calibrations required on FEI microscopes
- Calibrations required on the microscope alone before starting Leginon
- Calibration required on JEOL
- Image Beam Compensation Calibration
- Instrument Set-up
- New User Features 32
- Pixel Size Calibration
- Using image shift matrix calibration to refine image shift scale in jeolcfg
11/06/2015
11/04/2015
10/13/2015
10/12/2015
09/28/2015
09/09/2015
09/06/2015
07/29/2015
06/25/2015
06/23/2015
06/18/2015
- Comtypes installer
- Installation on the microscope computer 21
- Windows Installation
- Windows Myami Package installers
06/16/2015
06/12/2015
06/10/2015
05/07/2015
- Fix beam shift during data collection
- Graphical User Interface
- Make DDD movie stack
- Multi-Scale Imaging Applications in General
- Presets Manager
04/24/2015
04/22/2015
03/19/2015
03/12/2015
03/04/2015
03/02/2015
02/26/2015
02/12/2015
02/05/2015
12/01/2014
11/20/2014
10/08/2014
10/07/2014
08/28/2014
08/22/2014
08/13/2014
- Find and register a dll file as command components in Windows
- Unable to initializ Tecnai interface error
08/12/2014
- Add host
- Auto Nitrogen Filler Triggering
- Beam Tilt Imager
- Camera Configuration
- Child Imaging Area and Beam Diameter Display in TargetFinder Nodes
- DE raw frame saving
- Direct Electron DE-12 direct detection device support
- Falcon camera support
- How to Update from v30 (Linux)
- Instrument Usage Specifics
- New User Features 31
- Pyscope Changes 31
- Run Leginon Client on the Instrument Computers
- Saving frames from direct detectors
- Upgrade to Leginon System version 31 from version 30
- Using DE DDD in Leginon
- Using Falcon Orius combo in Leginon
- Using FEI Titan Krios in Leginon
08/11/2014
- Falcon acquire image
- Leginon "Manual Application"
- Leginon settings modification for Falcon camera
- The Application
08/08/2014
07/24/2014
07/20/2014
07/12/2014
07/11/2014
07/08/2014
06/19/2014
06/04/2014
05/27/2014
04/30/2014
04/18/2014
03/26/2014
02/06/2014
02/04/2014
01/10/2014
01/08/2014
01/06/2014
12/19/2013
12/18/2013
12/17/2013
- DD Frame Alignment Server Installation
- How to Update from v22-redux (Linux)
- Upgrade to Leginon System version 30 from version 22-redux
12/16/2013
12/14/2013
12/13/2013
11/01/2013
09/17/2013
09/16/2013
09/05/2013
07/01/2013
06/03/2013
05/29/2013
05/07/2013
04/18/2013
03/05/2013
01/22/2013
12/17/2012
12/10/2012
- Low dose shutter configuration for Gatan camera in Digital Micrograph program
- Tietz camera configuration
11/28/2012
- General operation problems
- Pausing and Aborting during data collection
- Restarting procedure to continue data acquisition
11/12/2012
10/17/2012
- DE-12 introduction
- Reload and Edit an existing application
- Using Leginon on a system where the microscope and camera are controlled by different computers
08/14/2012
07/10/2012
06/19/2012
06/08/2012
06/07/2012
06/06/2012
06/01/2012
05/31/2012
05/18/2012
05/14/2012
05/12/2012
05/10/2012
04/25/2012
03/02/2012
10/12/2011
10/11/2011
10/10/2011
05/26/2011
04/05/2011
- How to Update from v16 (Linux)
- How to Update from v20 (Linux)
- Upgrade to Leginon System version 21 from version 16
- Upgrade to Leginon System version 2x from version 16
03/17/2011
03/04/2011
02/24/2011
02/22/2011
- Full Protocol on a F30 with an energy filter
- Leginon "MSI-Tomography" Application
- Using "MSI-SimuTomography" Application for debugging
02/17/2011
02/02/2011
01/19/2011
- Default Settings
- Initial MSI application preferences
- Initial MSI application preference setup
- More about Groups
- Revert Settings
01/07/2011
01/03/2011
12/02/2010
11/17/2010
10/29/2010
- HM Beam Shift Image Shift Calibration
- How to Update from v20 (Microscope Windows Computer)
- Leginon System version 21
- PyScope Changes 21
10/28/2010
10/22/2010
10/12/2010
09/30/2010
09/24/2010
09/14/2010
08/19/2010
08/16/2010
- Image Beam Shift matrix calibration
- Ways of Moving to Targets in Nodes that acquire images inside MSI
08/02/2010
- Getting Help
- Getting Help - 2
- Getting Started as a Super User
- Getting Started as a System Administrator
- How to Update from v15 (Linux)
- How to Update from v15 (Window)
- Installation
- Network problems
- What is in this Chapter
07/27/2010
07/22/2010
07/21/2010
07/16/2010
07/15/2010
- 1st Pass application
- 2nd Pass application
- Evaluation application
- Grid management shared
- Leginon "Robot-MSI-Screen" Applications
- Operation
- Robot node set-up
- Summary of this application - Robot-MSI-Screen
- Upload Grids
07/09/2010
06/25/2010
- Acquisition
- BeamFixer
- Beam Tilt Calibrator
- Click Target Finder
- Dose Calibrator
- Drift Manager
- FFT Maker
- Gon Modeler
- Hole Depth
- Hole Finder
- JAHC Hole Finder (Template Hole Finder)
- Manual Acquisition
- Matrix Calibrator
- Mosaic Click Target Finder
- Pixel Size Calibrator
- Raster Filter
- Raster Finder
- Robot
- RobotAtlasTargetFinder
- Tomography
06/24/2010
- "Calibrations" Application
- "Manual" Application
- "MSI-Edge" Application
- "MSI-raster" Application
- "MSI-Tomography" Application
- 2 Way Viewer
- 3 Way Viewer
- Common Features
- Dual Viewer
- Hardware Troubles
- Image Tools
- Image Viewer
- Leginon System version 20
- Recommandation for setup at a new institute
- Running "Manual" Application
- Set up for a new regular user
- Startup Calibrations
- The EM node
- Transform Manager
- Troubles with Focusing and Drift Check
- Update from v11 and v12 NOT AVAILABLE
- Update from v13-Follow v14 update after performing these
- Update from v14
- Using the Web viewer
- Where to register and download Leginon
06/23/2010
- Calibration without presets
- Do and Do Not in leginon
- Importance of making calibrations
- What is the definition of ice thickness in the hole finders
- Why does the first Grid Image Not Numbered 00001
06/22/2010
- Exposure Targeting Set-up for MSI-Edge
- Queuing Example 1 - Exposure Targeting
- Queuing Example 2 - Hole Targeting only
- Queuing Example 3 - Both Exposure and Hole Targeting
- Special Operation setup
- Summary of this application - MSI-raster
06/21/2010
- Leginon "RobotMSI-Section" Application
- Multi-Scale Imaging Concept
- Other special preference set-up
- Raster Generation node set-up
- Summary of MSI applications
- Summary of this application - RobotMSI
- Tips on Operation
06/18/2010
06/01/2010
05/26/2010
05/24/2010
05/23/2010
- Add a new project for test
- Add a new project shared
- PyScope Changes 20
- Queuing Option - MSI-raster
- Queuing Option - MSI-T
05/21/2010
05/10/2010
04/27/2010
- "MSI-T" Application
- Advanced Features
- Getting Started as a basic Leginon user
- Improving Autofocusing
- Mosaic Target Maker
- Robot MSI-Section preference set-up
04/23/2010
- Four Parts of the Leginon System
- Frequent Asked Questions
- Installation Troubleshooting
- Leginon "MSI-raster" Application
- Leginon System version 1 6
- New Project Web Tool Features
- New User Features
- PyScope Change
- Terminology
- Updated Applications (All)
04/15/2010
- Check php information
- Compile Ace2
- Compile FindEM
- Compile Radermacher
- Differences between Linux flavors
- Explanation of Sample Names
- Install Apache Web Server
- Install External Packages
- Install the MRC PHP Extension
- Install the Web Interface
- Install Web Server Prerequisites
- Install Xmipp
- Potential Problems
- Test Appion
04/14/2010
- Bug Fixes
- Known Bugs
- New dbemtool Web Tool Features (151)
- Recommended Application Preference Changes when updated from version 15
- Recommended Application Preference Changes when updated from version 15 update
04/12/2010
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