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# Project Tracker Status Priority Subject Author Assignee Updated
1905 Appion Bug Assigned Normal ace2correct does not work correctly on images of rectangular shape Melody Campbell Melody Campbell 08/07/2012 11:25 AM Actions
1904 Appion Bug New Normal Particle picking editing in viewer is not working Bridget Carragher 07/12/2012 09:16 AM Actions
1903 Appion Bug Assigned Normal refineJob other than xmipp does not have pickle file to pack in tar Anchi Cheng Anchi Cheng 07/11/2012 01:49 PM Actions
1902 Appion Support Assigned Normal aligning defocus pairs - switching to phase correlation Gabriel Lander Anchi Cheng 07/13/2012 08:38 AM Actions
1893 Appion Feature New Normal BoxMask a stack during stack creation Gabriel Lander 08/13/2012 01:20 PM Actions
1887 Appion Bug New Normal prepFrealign don't always show previous recon iterations for initializing parameters if not all particles were used in previously Anchi Cheng Anchi Cheng 09/29/2014 02:12 PM Actions
1883 Appion Bug In Code Review Normal Switch CTF powerspec fit from peaks to valleys and add 3rd column for opimage #3 Neil Voss Anchi Cheng 06/25/2012 02:29 PM Actions
1879 Appion Bug Assigned Normal log error and warning for freaglign in apRefineJobFrealign Anchi Cheng Anchi Cheng 06/22/2012 07:22 PM Actions
1878 Appion Bug New Normal centerParticleStack.py creates substack but does not save new particle coordinates Anchi Cheng 06/21/2012 05:07 PM Actions
1875 Appion Bug In Code Review High redux info reading error on png image Anchi Cheng Jim Pulokas 07/12/2012 10:22 AM Actions
1866 Appion Bug In Code Review Normal import parameters from previous refinement should limit to same package usage Anchi Cheng Anchi Cheng 07/10/2013 01:41 PM Actions
1848 Appion Bug New Normal makestack2.py David Veesler 06/11/2012 09:48 AM Actions
1837 Appion Task Assigned Normal dbschema update for release 2.2 Anchi Cheng Anchi Cheng 06/05/2012 05:32 PM Actions
1834 Appion Bug New Normal Missing help info for prepRefineForm.php frealign parameters Amber Herold 08/18/2014 05:39 PM Actions
1824 Appion Bug New Normal "cput" in cluster config file ignored by maxlikeAlignment.py Jim Pulokas 05/25/2012 04:04 PM Actions
1821 Appion Bug In Test Normal Refine form default values not loading properly Amber Herold Anchi Cheng 06/01/2012 02:42 PM Actions
1814 Appion Bug In Code Review High runDogPicker.php puts --ddstartframe=1 in appion script Anchi Cheng Anchi Cheng 06/01/2012 03:30 PM Actions
1757 Appion Feature Assigned High use eman2 in makestack2.py Anchi Cheng Anchi Cheng 07/10/2013 12:52 PM Actions
1755 Appion Bug In Code Review Normal upload stack does not work if uploading from a file that the web server does not have access to Amber Herold Anchi Cheng 06/01/2012 01:31 PM Actions
1749 Appion Bug New Normal Problem with SMTP mail server Amber Herold 08/18/2014 05:33 PM Actions
1748 Appion Feature New Normal Allow maxlikealign jobs to run on remote clusters Amber Herold Sargis Dallakyan 04/29/2014 05:25 PM Actions
1743 Appion Feature New Normal Add the STARTUP_MESSAGE config file entry to the config wizard Amber Herold 08/18/2014 05:37 PM Actions
1735 Appion Bug In Code Review Normal Traced objects with small number of vertices are distorted Anchi Cheng Jim Pulokas 04/16/2012 09:57 PM Actions
1731 Appion Bug New Normal Remove ssh.inc Amber Herold 08/18/2014 05:44 PM Actions
1728 Appion Feature New Low Add appion script to test for sinedon.cfg on processing host Amber Herold 04/16/2012 12:37 PM Actions
1725 Appion Bug New Normal Postproc.php just show command is not displayed correctly Amber Herold 09/29/2014 02:23 PM Actions
1722 Appion Bug Assigned Normal set nproc to 1 in runCL2DAlign.php ends up trying to use all processors in the node? Anchi Cheng Dmitry Lyumkis 04/15/2012 10:35 PM Actions
1721 Appion Bug New Normal Stack selector show stacks with no particles in general Anchi Cheng 04/15/2012 08:44 PM Actions
1715 Appion Bug In Code Review Normal readImagic does not use smaller particle iteration number for larger particle image Anchi Cheng Dmitry Lyumkis 04/13/2012 02:14 PM Actions
1710 Appion Bug Assigned Urgent limit nproc passed from apGenericJob.py Anchi Cheng Dmitry Lyumkis 06/04/2012 04:54 PM Actions
1709 Appion Bug New Normal tilt aligner does sometimes not work Arne Moeller 04/11/2012 10:57 AM Actions
1708 Appion Bug New Normal wait-for-more-images-in tilt aligner is not working Arne Moeller 04/11/2012 10:55 AM Actions
1707 Appion Bug New Normal problems with image downloader Arne Moeller 08/18/2014 05:05 PM Actions
1698 Appion Bug In Code Review Normal Add exception handling for missing file in apXmipp.py Amber Herold Dmitry Lyumkis 04/11/2012 04:12 PM Actions
1680 Appion Bug New Normal When --best-images flag is set in command, non-exemplars are still being processed Amber Herold 03/26/2012 01:09 PM Actions
1669 Appion Test Case Untested Normal runTomoAutoRecon.php Amber Herold 03/15/2012 01:13 PM Actions
1668 Appion Test Case Pass Normal runManualPicker.php Amber Herold 03/29/2012 10:15 AM Actions
1667 Appion Test Case Untested Normal runHIP.php Amber Herold 03/15/2012 01:08 PM Actions
1666 Appion Test Case Untested Normal runCL2DAlign.php Amber Herold 03/15/2012 01:07 PM Actions
1665 Appion Test Case Untested Normal hipostproc.php Amber Herold 03/15/2012 01:05 PM Actions
1664 Appion Test Case Untested Normal boxmask.php Amber Herold 03/15/2012 01:03 PM Actions
1663 Appion Test Case Untested Normal analyzeTracedObject.php Amber Herold 03/15/2012 01:02 PM Actions
1662 Appion Test Case Fail High Run Multi-Model Refinement: XMIPP ML3D Amber Herold Dmitry Lyumkis 04/12/2012 01:14 PM Actions
1661 Appion Test Case Untested High Run Single-Model Refinement: Frealign Amber Herold 03/15/2012 12:53 PM Actions
1660 Appion Test Case Pass High Run Single-Model Refinement: XMIPP Amber Herold Dmitry Lyumkis 03/15/2012 03:02 PM Actions
1659 Appion Test Case Untested High Run Single-Model Refinement: EMAN Amber Herold 03/15/2012 12:52 PM Actions
1658 Appion Test Case Untested Normal imagicMSAcluster.php Amber Herold 03/15/2012 12:47 PM Actions
1657 Appion Test Case Untested High uploadimage.php Amber Herold 03/15/2012 12:47 PM Actions
1656 Appion Test Case Untested High runUploadMaxLike.php Amber Herold 03/15/2012 12:46 PM Actions
1655 Appion Test Case Untested Normal runTopolAlign.php Amber Herold 03/15/2012 12:45 PM Actions
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